Publications: Jon Brodie

Book

  1. Wilkinson, C. & Brodie, J.E. (2011). Catchment management and coral reef conservation: a practical guide for coastal resource managers to reduce damage from catchment areas based on best practice case studies. Global Coral Reef Monitoring Network and Reef and Rainforest Research Centre, Townsville, Australia. 120pp.

Book Chapters

  1. Bainbridge, Z.T., Dight, I., Yorkston, H. & Brodie, J.E. (2011). Catchment management in a dry tropical river near the Great Barrier Reef. In: Catchment Management and Coral Reef Conservation: a practical guide for coastal resource managers to reduce damage from catchment areas based on best practice case studies (eds: Wilkinson, C. & Brodie, J.E.). Global Coral Reef Monitoring Network and Reef and Rainforest Research Centre, Townsville, Australia. pp.96-97.

  2. Fabricius, K., Brodie, J.E., Waterhouse, J. & Yorkston, H. (2011). Science-based catchment management is evolving along the Great Barrier Reef of Australia In: Catchment Management and Coral Reef Conservation: a practical guide for coastal resource managers to reduce damage from catchment areas based on best practice case studies (eds: Wilkinson, C. & Brodie, J.E.). Global Coral Reef Monitoring Network and Reef and Rainforest Research Centre, Townsville, Australia. pp.102–105.

  3. Waterhouse, J., Grundy, M., Brodie, J.E., Gordon, I., Yorkston, H. & Eberhard, R. (2010). Managing the catchments of the Great Barrier Reef. In: Handbook of Catchment Management (eds: Ferrier, R. & Jenkins, A.), 560pp. Blackwell Publishing.

  4. Bohnet, I., Brodie, J.E. & Bartley, R. (2008). Assessing water quality impacts of community defined land use change scenarios for the Douglas Shire, far north Queensland. In: Landscape Analysis and Visualisation: Spatial Models for Natural Resource Management and Planning, 19:383-406. Springer-Verlag, Berlin.

  5. Brodie, J.E. & Fabricius, K. (2008). Terrestrial runoff to the Great Barrier Reef and the implications for its long term ecological status. In: The Great Barrier Reef: Biology, Environment and Management (eds: Hutchings, P., Kingsford, M. & Hoegh-Guldberg, O.), 11:108-113.CSIRO Publishing and Springer, Collingwood and Dordrecht.

  6. Turak, E., Brodie, J.E. & DeVantier, L. (2007). Reef-building corals and coral communities of the Yemen Red Sea. In: Fauna of Arabia, pp.1-40. Karger Libri AG.

  7. Brodie, J.E. (2003). The Great Barrier Reef: 25 Years of management as a large marine ecosystem. In: Large Marine Ecosystems of the World: Trends in Exploration, Protection, and Research (eds: Hempel, G. & Sherman, K.), 313-336. Elsevier.

  8. Brodie, J.E. (1999). Management of the Great Barrier Reef as a large marine ecosystem. In: Large Marine Ecosystems of the Pacific Rim (eds: Sherman, K. & Tang, Q.), pp. 428-437. Blackwell Science, Malden.

Journal Articles

  1. Bohnet, I.C., Roebeling, P.C., Williams, K.J., Holzworth, D., van Grieken, M.E., Pert, P.L. Kroon, F.J., Westcott, D.A. & Brodie, J.E. (in press). Landscapes Toolkit: an integrated modeling framework to assist stakeholders in exploring options for sustainable landscape development. Landscape Ecology.

  2. Devlin, M.J., Schroder, T, McKinna, L & Brodie, J.E. (in press). Monitoring and mapping of flood plumes in the Great Barrier Reef based on in-situ and remote sensing observations. In: Advances in Environmental Remote Sensing to Monitor Global Changes.

  3. Davis, A.M., Thorburn, P.J., Lewis, S.E., Bainbridge, Z.T., Attard, S.J., Milla, R. & Brodie, J.E. (in press). Herbicide run-off dynamics of furrow irrigated sugarcane farms and associated drainage systems on the Burdekin River Floodplain, north-eastern Australia. Agriculture, Ecosystems and the Environment

  4. Brodie, J.E., Devlin, M.J., Haynes, D. & Waterhouse, J. (2011). Assessment of the eutrophication status of the Great Barrier Reef lagoon (Australia). Biogeochemistry, DOI 10.1007/s10533-010-9542-2.

  5. Brodie, J.E., Schroeder, T., Rohde, K., Faithful, J.W., Masters, B., Dekker, A., Brando, V. & Maughan, M. (2010). Dispersal of suspended sediments and nutrients in the Great Barrier Reef lagoon during river discharge events: conclusions from satellite remote sensing and concurrent flood plume sampling. Marine and Freshwater Research, 61:651-664.

  6. Pert, P.L., Butler, J.R., Brodie, J.E., Bruce, C., Honzák, M., Kroon, F., Metcalfe, D., Mitchell, D. & Wong G. (2010). A catchment-based approach to mapping hydrological ecosystem services using riparian habitat: a case study from the Wet Tropics, Australia. In: Ecosystem services: bridging ecology, economy and the social sciences. Ecological Complexity, 7:378-388.

  7. Scott, C., Lewis, S.E., Milla, R., Taylor, M.C., Rogers, A., Dumsday, G., Brodie, J.E., Oakeshott, J.O. & Russell, R.J. (2010). A free-enzyme catalyst for the bioremediation of environmental altrazine contamination. Journal of Environmental Managemeny, 91:2075-2078.

  8. Shenton, W., Hart, B.T. & Brodie, J.E. (2010). A Bayesian network model linking nutrient management actions in the Tully catchment (north Queensland) with reef condition. Marine and Freshwater Research, 61:587-595.

  9. Bainbridge, Z.T., Brodie, J.E., Faithful, J.W., Sydes, D.A. & Lewis, S.E. (2009). Identifying the land-based sources of suspended sediments, nutrients and pesticides discharged to the Great Barrier Reef from the Tully-Murray Basin, Queensland, Australia. Marine and Freshwater Research, 60:1081-1090.

  10. Brodie, J.E., Lewis, S.E., Bainbridge, Z.T., Mitchell, A., Waterhouse, J. & Kroon., F. (2009). Target setting for pollutant discharge management of rivers in the Great Barrier Reef catchment area. Marine and Freshwater Research, 60:1141-1149.

  11. Kroon, F.J. & Brodie, J.E. (2009). Catchment management and health of coastal ecosystems: synthesis and future research. Marine and Freshwater Research, 60:1196-1200.

  12. Lewis, S.E., Brodie, J.E., Bainbridge, Z.T., Rohde, K., Davis, A.M., Masters, B., Maughan, M., Devlin, M.J., Mueller, J. & Schaffelke, B. (2009). Herbicides: a new threat to the Great Barrier Reef. Environmental Pollution, 157:2470-2484.

  13. Maughan, M. & Brodie J.E. (2009). Reef exposure to river-borne contaminants: a spatial model. Marine and Freshwater Research, 60:1132-1140.

  14. Mitchell, A., Reghenzani, J., Faithful, J.W., Furnas, M. & Brodie, J.E. (2009). Relationships between land use and nutrient concentrations in streams draining a ‘wet-tropics’ catchment in northern Australia. Marine and Freshwater Research, 60:1097-1108.

  15. Davis, A.M., Lewis, S.E., Bainbridge, Z.T., Brodie, J.E. & Shannon, E. (2008). Pesticide residues in waterways of the lower Burdekin region: challenges in ecotoxicological interpretation of monitoring data. Australasian Journal of Ecotoxicology, 14:89-108.

  16. Brodie, J.E., De'ath, G., Devlin, M.J., Furnas, M. & Wright, M. (2007). Spatial and temporal patterns of near-surface chlorophyll a in the Great Barrier Reef lagoon. Marine and Freshwater Research, 58:342–353.

  17. Haynes, D.B., Brodie, J.E., Waterhouse, J., Bainbridge, Z.T., Bass, D. & Hart, B. (2007). Assessment of the water quality and ecosystem health of the Great Barrier Reef (Australia): conceptual models. Environmental Management, 40:993–1003.

  18. Wooldridge, S., Brodie, J.E. & Furnas, M. (2006). Exposure of inner-shelf reefs to nutrient enriched runoff entering the Great Barrier Reef Lagoon: post European changes and the design of water quality targets. Marine Pollution Bulletin, 52:1467–1479.

  19. Brodie, J.E., Fabricius, K., De'ath, G. & Okaji, K. (2005). Are increased nutrient inputs responsible for more outbreaks of crown-of-thorns starfish? An appraisal of the evidence. Marine Pollution Bulletin, 51:266–278.

  20. Brodie, J.E. & Mitchell, A.W. (2005). Nutrients in Australian tropical rivers: changes with agricultural development and implications for receiving environments. Marine and Freshwater Research, 56:279-302.

  21. Devlin, M.J. & Brodie, J.E. (2005). Terrestrial discharge into the Great Barrier Reef Lagoon: nutrient behaviour in coastal waters. Marine Pollution Bulletin, 51:9-22.

  22. Furnas, M., Mitchell, A., Skuza, M. & Brodie, J.E. (2005). In the other 90%: phytoplankton responses to enhanced nutrient availability in the Great Barrier Reef. Marine Pollution Bulletin, 51:253-265.

  23. Greiner, R., Herr, A., Brodie, J.E. & Haynes, D.B. (2005). A multi-criteria approach to Great Barrier Reef catchment (Queensland, Australia) diffuse-source pollution problem. Marine Pollution Bulletin, 51:128-137.

  24. McKergow, L., Prosser, I.P., Hughes, A.O. & Brodie, J.E. (2005). Sources of sediment to the Great Barrier Reef World Heritage Area. Marine Pollution Bulletin, 51:200-211.

  25. McKergow, L., Prosser, I.P., Hughes, A.O. & Brodie, J.E. (2005). Regional scale nutrient modelling: exports to the Great Barrier Reef World Heritage Area. Marine Pollution Bulletin, 51:186-199.

  26. Mitchell, C., Brodie, J.E. & White, I. (2005). Sediments, nutrients and pesticide residues in event flow conditions in streams of the Mackay Whitsunday Region, Australia. Marine Pollution Bulletin, 51:23-36.

  27. Moss, A., Brodie, J.E. & Furnas, M. (2005). Water quality guidelines for the Great Barrier Reef World Heritage Area: a basis for development and preliminary values. Marine Pollution Bulletin, 51:76–88.

  28. O’Reagain, P.J., Brodie, J.E., Fraser, G., Bushell, J.J., Holloway, C., Faithful, J.W. & Haynes, D. (2005). Nutrient loss and water quality under extensive grazing in the upper Burdekin river catchment, North Queensland. Marine Pollution Bulletin, 51:37-50.

  29. Marshall P., Christie C., Dobbs K., Green A., Haynes D., Brodie J.E., Michalek-Wagner K., Smith A., Storrie J. & Turak E. (2002). Grounded ship leaves TBT-based antifoulant on the Great Barrier Reef: an overview of the environmental response. Spill Science and Technology Bulletin, 7:215-221.

  30. Brodie J.E., Christie C., Devlin M.J., Haynes D., Morris S., Ramsay M., Waterhouse J. & Yorkston H. (2001). Catchment management and the Great Barrier Reef. Water Science and Technology, 43: 203-211.

  31. Devlin M.J., Waterhouse J. & Brodie J.E. (2001). Community and connectivity: summary of a community based monitoring program set up to assess the movement of nutrients and sediments into the Great Barrier Reef during high flow events. Water Science and Technology, 43:121-131.

  32. Koop K., Hutchings P.A., Hoegh-Guldberg, O., Booth, D., Brodie J.E, Bucher D., Coll J., Dennison W., Erdmann M., Harrison P., Jones G.B., Larkum A.W.D., O'Neil J., Steven A., Tentori T., Ward S. & Yellowlees D. ( 2001). ENCORE: The effects of nutrient enrichment on coral reefs. Synthesis of results and conclusions. Marine Pollution Bulletin, 42:91-120.

  33. Chiswell R.K., Jones G.B. & Brodie J.E. (1997). Investigations of the speciation of phosphorus in coastal and estuarine waters of the Great Barrier Reef using iron strips and colorimetry. Marine and Freshwater Research, 48:287-293.

  34. Brodie, G.D. & Brodie, J.E. (1995). Species diversity and habitat selection in opisthobranch gastropods on two adjacent reefs in Fiji. South Pacific Journal of Natural Science, 14:97–113.

  35. Brodie, J.E. (1992). Enhancement of larval and juvenile survival and recruitment in Acanthaster planci from the effects of terrestrial runoff: a review. Australian Journal of Marine and Freshwater Research, 43:539-554.

  36. Zann, L.P., Brodie, J.E. & Vuki, V. (1990). History and dynamics of the crown-of-thorns starfish, Acanthaster planci (L.) in the Suva area, Fiji. Coral Reefs, 9:135-144.

  37. Zann, L., Brodie, J.E., Berryman, C. & Naqasima, M. (1987). Recruitment, ecology, growth and behaviour of juvenile Acanthaster planci (L). Bulletin of Marine Science, 41:561-575.

  38. Ash, J., Brodie, J.E., Southern, W. & Ryan, P. (1986). The flora, fauna and water chemistry of Tagimaucia Crater: a tropical highland lake and swamp in Fiji. Freshwater Biology, 16:509-520.

  39. Brodie, J.E., Hicks, W.S., Richards, G.N. & Thomas, F.G. (1984). Residues related to agricultural chemicals in the groundwater of the Burdekin River Delta, north Queensland. Environmental Pollution (Series B), 8:187-215.

  40. Brodie, J.E. & Morrison, R.J. (1984). The management and disposal of hazardous wastes in the Pacific Islands. Ambio, 13:331-333.

ACTFR Technical Reports

  1. Lewis, S.E. & Brodie, J.E. (2011). A water quality issues analysis for the Johnstone River basin. Report 11/05, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  2. Lewis, S.E. & Brodie, J.E. (2011). A water quality issues analysis for the Mulgrave River catchment. Report 11/06, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  3. Lewis, S.E. & Brodie, J.E. (2011). A water quality issues analysis for the Russell River catchment. Report 11/07, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  4. Brodie, J.E., Waterhouse, R.J., Lewis, S.E., Basnett, A., Davis, A.M. & Alexander, F. (2010). Comparative effectiveness of community drainage schemes and EVTAs in trapping PSII herbicides from sugar cane farms. Appendix 1. 10/14. Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  5. Brodie, J.E. & Alexander, F. (2010). Pesticides in Australian waters: concentrations, toxicity, effects and management. 10/09. Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  6. Mitchell, A., Brodie, J.E. & Furnas, M. (2010). Report on AIMS river nutrient data collected from downstream sites in major Queensland rivers draining to the Great Barrier Reef lagoon, 1987 – 2000. (Sampling Locations). Report 10/01, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  7. Brodie, J.E. & Waterhouse, J. (2009). Assessment of the relative risk of impacts of broad-scale agriculture on the Great Barrier Reef and priorities for investment under the Reef Protection Package. Stage 1 Report: April 2009. Report 09/17, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  8. Brodie, J.E., Mitchell, A. & Waterhouse, J. (2009). Regional assessment of the relative risk of the impacts of broad-scale agriculture on the Great Barrier Reef and priorities for investment under the Reef Protection Package. Stage 2. Report, July 2009. Report 09/30, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville..

  9. Brodie, J.E. Waterhouse, J., Lewis, S.E., Bainbridge, Z.T. & Johnson, J. (2009). Current loads of priority pollutants discharged from Great Barrier Reef Catchments to the Great Barrier Reef. Report 09/02, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  10. Lewis, S.E., Bainbridge, Z.T., Sherman, B.S., Brodie, J.E. & Cooper, M. (2009). Trapping efficiency of the Burdekin Falls Dam, north Queensland: estimates from a three-year monitoring program. Report to the Marine and Tropical Sciences Research Facility, Reef and Rainforest Research Centre, Cairns. Report 09/15, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  11. Lewis, S.E., Brodie, J.E., Bainbridge, Z.T., Rohde, K., Davis, A.M., Masters, B., Maughan, M., Devlin, M.J., Mueller, J. & Schaffelke, B. (2009). Pesticide runoff to the Great Barrier Reef: assessing the risks. Report 09/16, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  12. Lewis, S.E., Brodie, J.E., Jupiter, S.D., McCulloch, M.T., Stuart-Williams, H., Clayton, S., Lough, J.M. & Matson, E.G. (2009). Preliminary report on coral geochemical records from the Whitsunday Islands. Assessing a water quality gradient. Report 09/37, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville. (Confidential)

  13. Bainbridge, Z.T, Brodie, J.E., Manning, C., Waterhouse, J. & Lewis, S.E. (2008). Integrated monitoring and modelling strategy for the Black Ross Water Quality Improvement Plan. Report 08/17, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  14. Bainbridge, Z.T., Lewis, S.E. & Brodie, J.E. (2008). Event-based community water quality monitoring in the Burdekin Dry Tropics region: 2007/08 wet season update. Report 08/19, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  15. Brodie, J.E., Kinsey-Henderson, A., Sherman, B., Bartley, R., Lewis, S.E., Mitchell, A., Bainbridge, Z.T., Thorburn, P., Biggs, J., Shannon, E., Milla, R., Attard, S., Maughan, M., Anderson, T. & Davis, A.M. (2008). Water quality targets for the Burdekin WQIP. Report 08/05, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  16. Faithful, J., Liessmann, L., Brodie, J.E., Bainbridge, Z.T., Schaffelke, B., Slivkoff, M., Ledee, E., Sydes, D. & Maughan, M. (2008). Water quality characteristics of water draining different land uses in the Tully/Murray rivers region - Edition 2. Report 08/03, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  17. Lewis, S.E., Bainbridge, Z.T. & Brodie, J.E. (2008). Water quality monitoring of Black Ross basins: 2007/08. Report 08/04, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  18. Mitchell, A., Brodie, J.E., Lewis, S.E., Devlin, M.J., Bainbridge, Z.T. & Furnas, M. (2008). Water quality issues in the Barron River WQIP area. Report 08/06, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  19. O’Reagain, P., Bainbridge, Z.T. & Brodie, J.E. (2008). Wambiana grazing trials water quality report. Report 08/24, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  20. Webster, T. & Brodie, J.E. (2008). Douglas Shire fertilizer trial and a review of nitrogen fertilizer research in sugar cane cultivation. Report 08/25, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  21. Bainbridge, Z.T., Lewis, S.E., Brodie, J.E., Liessmann, L., Davis, A.M., Maughan, M., Lymburner, L., Bartley, R., Hawdon, A., Keen, R., & Verwey, P. (2007). Event-based community water quality monitoring in the Burdekin Dry Tropics Region: 2006-2007 Volume 1 (2006/07 Wet Season Report) and 2002-2007 Volume 2 (Integrated 2002-2007 Wet Season Report). Report 07/22, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  22. Brodie, J.E., Bainbridge, Z.T. & Lewis, S.E. (2007). Tully/Murray water quality monitoring strategy for the FNQNRM Fully Water Quality Improvement Plan. Report 07/18, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  23. Brodie, J.E., Bainbridge, Z.T. & Lewis, S.E. (2007). A comparison of the establishment and implementation of community-based water quality monitoring programs in the Tully, Burdekin and Mackay Whitsunday Regions. Report to the CSIRO WfHC Flagship Collaboration Research Fund. Report 07/26. Australian Centre for Tropical Freshwater Research, James Cook University, Townsville. (Confidential)

  24. Brodie, J.E., Butler, B.M., Pearson, R. & Bainbridge, Z.T. (2007). Water quality monitoring in Queensland catchments. Report 07/08, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville. (Confidential)

  25. Brodie, J.E., Butler, B.M., Pearson, R., Bainbridge, Z.T. & Lewis, S.E. (2007). Water quality monitoring in tropical Queensland: context and issues for the Catchment to Reef program. Report 07/24. Australian Centre for Tropical Freshwater Research, James Cook University, Townsville. (Confidential)

  26. Brodie, J.E., Mitchell, A., Lewis, S.E., Bainbridge, Z.T., Faithful, J.., Hateley, L., Armour, J., Maughan, M. & Reghenzani, J. (2007). Water quality issues in the Tully Region for FNQNRM Coastal Catchment Initiative. Report 07/04, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  27. Brodie, J.E., Pearson, R., Lewis, S.E., Bainbridge, Z.T., Waterhouse, J. & Prange J. (2007). Water quality research: baseline synthesis and Year 1 summary. Report 07/21, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  28. Faithful, J.W., Brodie, J.E., Hooper, A., Leahy, P., Henry, G., Finlayson, W. & Green, D. (2007). Plot-scale runoff of nutrients and sediment under varying management regimes on a banana and cane farm in the Wet Tropics, Queensland – November 2002 to July 2006. An ACTFR project for Task 1, Catchment to Reef Project. Report 07/10, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  29. Lankester, A., Dight, I., Brodie, J.E., Bainbridge, Z.T. & Lewis, S.E. (2007). Environmental values and water quality objectives for the estuarine and coastal areas of the Lower Burdekin region. Prepared for the Burdekin Dry Tropics NRM Coastal Catchments Initiative. Report 07/23, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  30. Lewis, S.E., Davis, A.M., Brodie, J.E., Bainbridge, Z.T., McConnell, V. & Maughan, M. (2007). Pesticides in the Lower Burdekin and Don River catchments, 2005-2007. Report 07/05, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  31. Liessmann, L., Lewis, S.E., Bainbridge, Z.T., Butler, B.M., Brodie, J.E., Faithful, J.W. & Maughan, M. (2007). Event-based water quality monitoring of the Ross and Black River basins during the 2006/07 wet season. Volume1 - Main Report for the Creek to Coral Ross Black Water Quality Improvement Plan, Volume 2 - Appendices. Report 07/09, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  32. Maughan, M., Brodie, J.E. & Waterhouse, J. (2007). Reef exposure model for the Great Barrier Reef lagoon. Report 07/19, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  33. Mitchell, A., Brodie, J.E. & Faithful, J.W. (2007). Testing simple sediment and nutrient measurement methods for landholder use. Report 07/06, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  34. Mitchell, A., Lewis, S.E., Brodie, J.E., Bainbridge, Z.T. & Maughan, M. (2007). Water quality issues in the Burdekin region, for the Burdekin Dry Tropics NRM Coastal Catchment Initiative. Report 07/03, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  35. Bainbridge, Z.T., Brodie, J.E., Lewis, S.E., Faithful, J.W., Post, D., Duncan, I. & Furnas, M. (2006). Event-based water quality monitoring in the Burdekin Dry Tropics Region. 2004/2005 wet season. Report 06/01, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  36. Bainbridge, Z.T., Lewis, S.E., Brodie, J.E., Faithful, J.W. & Maughan, M. (2006). Event monitoring in the Burdekin region in the 05/06 wet season. Report 06/13, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  37. Brodie, J.E. (2006). Nutrient management zones in the Great Barrier Reef catchment: a decision system for zone selection, Nutrient Management Zones (NMZ). (Appendix). Report 06/07, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  38. Brodie, J.E., Bainbridge, Z.T. & Lewis, S.E. (2006). Burdekin water quality “Modelling” strategy 2006 for the Burdekin Dry Tropics NRM Water Quality Improvement Plan. Report 06/23, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville. (Confidential)

  39. Brodie, J.E., Bainbridge, Z.T. & Lewis, S.T. (2006). Burdekin water quality “Monitoring” strategy 2006 for Burdekin Dry Tropics NRM Water Quality Improvement Plan. Report 06/24, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville. (Confidential)

  40. Faithful, J.W., Liessmann, L., Brodie, J.E., Ledee, E., Sydes D & Maughan, M. (2006). Water quality characteristics of water draining different land uses in the Tully/Murray Rivers Region (Dec 2005 to June 2006). Report 06/25, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  41. Lewis, S.E., Brodie, J.E. & Ledee, E. (2006). The spatial extent of delivery of terrestrial materials from the Mackay-Whitsunday region in the Great Barrier Reef lagoon. Report 06/14, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  42. Lewis, S.E., Brodie, J.E., Ledee, E. & Alewijnse, M. (2006). The spatial extent of delivery of terrestrial materials from the Burdekin region in the Great Barrier Reef lagoon. Report 06/02, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  43. Mitchell, A., Furnas, M., De’ath, G., Brodie, J.E. & Lewis, S.E. (2006). A report into the water quality condition of the Burdekin River and surrounds based on the AIMS end-of-catchment sampling program. Report 06/06, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  44. Mitchell, A., Reghenzani, J., Furnas, M., De’ath, G., Brodie, J.E., & Lewis, S.E. (2006). Nutrients and suspended sediments in the Tully River: spatial and temporal trends. Report 06/10, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  45. Brodie, J.E., Duncan, I., Bainbridge, Z.T., Post, D. & Furnas, M. (2005). Burdekin region water quality monitoring, January 2005 event. Interim report to the Burdekin Dry Tropics Board, July 2005. Report 05/01, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  46. Brodie, J.E. & Mitchell, A. (2005). Sediments and nutrients in north Queensland tropical streams: changes with agricultural development and pristine condition status. Report 05/05, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  47. Faithful, J.W., Brodie, J.E., Armstrong, C. & Bubb, K. (2005). Nutrient concentrations in 2003-04 wet season run off, draining a pine plantation in the wet tropics of north Queensland, Australia. Report 05/02, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  48. Faithful, J.W., Brodie, J.E., Hooper, A., Leahy, P., Henry, G., Finlayson, W. & Green, D. (2005). Plot-scale runoff of nutrients and sediment under varying management regimes on a banana and cane farm in the wet tropics, Queensland: November 2002 to July 2006. Report 05/03, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  49. Brodie, J.E. (2004). Land use practices in the Stettin Bay catchment area and their relation to the status of the coral reefs in Kimbe Bay. Report 04/01, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  50. Brodie, J.E., Faithful, J.W & Cullen, K. (2004). Community water quality monitoring in the Burdekin River catchment and estuary, 2002-2004. Report 04/15, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  51. Brodie, J.E., McKergow, L.W., Prosser, I.P., Furnas, M., Hughes, A.O. & Hunter, H. (2003). Sources of sediment and nutrient exports to the Great Barrier Reef World Heritage Area. Report 03/11, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  52. Brodie J. (2002). GBRWHA water quality monitoring program. Report 02/01, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  53. Brodie J. (2002). The effects of landuse on water quality in Australian north-east coastal catchments and coastal waterways. Report 02/07, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

  54. Loong D., Faithful J. & Brodie J. (2001). An assessment of potential water quality impacts by motorized watercraft in Ross River Dam: a literature review. ACTFR report no. 01/09, Australian Centre for Tropical Freshwater Research, James Cook University, Townsville.

Conference Proceedings

  1. Bainbridge, Z.T., Lewis, S.E. & Brodie, J.E. (2010). Identifying suspended sediments within the Burdekin River that are at most risk to the GBR catchment and plume processes. 2010 Annual Conference of the Marine and Tropical Sciences Research Facility (MTSRF): Impacts and Achievements of the MTSRF. May, Cairns.

  2. Bainbridge, Z.T., Lewis, S.E., Wolanski, E. & Brodie, J.E. (2010). Identifying suspended sediments within the Burdekin River that are at most risk to the GBR: catchment and plume processes. Challenges in Environmental Science and Engineering. Abstracts, p.76. September, Cairns, Australia.

  3. Brodie, J.E., Bainbridge, Z.T., Lewis, S.E., Devlin, M.J., Waterhouse, J., Davis, A.M. & Wolanski, E. (2010). Terrestrial pollutant runoff to the Great Barrier Reef: issues, priorities and management response. Challenges in Environmental Science and Engineering. Abstracts, p.33. September, Cairns, Australia.

  4. Brodie, J.E., Kroon, F., Wolanski, E., Waterhouse, J., Lewis, S.E., Kuhnert, P., Wallace, J., Lynam, T., Wilkinson, S., Honchin, C. & Bainbridge, Z.T. (2010). Setting ecologically relevant targets for pollution reduction to sustain the ecosystems of the Great Barrier Reef. Challenges in Environmental Science and Engineering. Abstracts, p.78. September, Cairns, Australia.

  5. Devlin, M.J., McKinna, L., Schroeder, T., Schaffelke, B., Brando, V. & Brodie, J.E. (2010). Riverine plumes in the Great Barrier Reef: mapping plume extent and composition using remote sensing imagery. 2010 Annual Conference of the Marine and Tropical Sciences Research Facility (MTSRF): Impacts and Achievements of the MTSRF. May, Cairns, Australia.

  6. Henderson, B., Kuhnert, P., Lewis, S.E., Bainbridge, Z.T. & Brodie, J.E. (2010). Quantifying pollutant loads with measured uncertainty for the Burdekin catchment using the ‘Loads Regression Estimator’. Challenges in Environmental Science and Engineering. Abstracts, p.80. September, Cairns, Australia.

  7. Lewis, S.E. Bainbridge, Z.T. Sherman, B., Kuhnert, P., Cooper, M. & Brodie, J.E. (2010). Sediment trapping efficiencies in reservoirs in tropical environments: an example from the Burdekin Falls Dam, Queensland, Australia. 2010 Annual Conference of the Marine and Tropical Sciences Research Facility (MTSRF): Impacts and Achievements of the MTSRF. May, Cairns.

  8. Lewis, S.E. Bainbridge, Z.T. Sherman, B.S. Kuhnert, P. Henderson, B. Cooper, M. & Brodie, J.E. (2010). Trapping efficiencies of highly variable reservoirs: an application for Sources Catchments modelling. Challenges in Environmental Science and Engineering. Abstracts, p.114. September, Cairns, Australia.

  9. Lewis, S.E., Brodie, J.E., Jupiter, S.D., McCulloch, M.T., Stuart-Williams, H., Clayton, S., Lough, J.M. & Matson, E.G. (2010). Coral geochemical records along a persistent water quality gradient: Whitsunday Islands, Great Barrier Reef, Australia. Challenges in Environmental Science and Engineering. Abstracts, p.132. September, Cairns, Australia.

  10. Lewis, S.E., Schaffelke, B., Brodie, J.E., Bainbridge, Z.T., Davis, A.M. & Devlin, M.J. (2010). Analysing the risk of photosystem II inhibiting herbicides on the Great Barrier Reef. Challenges in Environmental Science and Engineering. Abstracts, p.149. September, Cairns, Australia.

  11. Lewis, S.E., Schaffelke, B. Brodie, J.E., Bainbridge, Z.T. Davis, A.M. & Devlin, M.J. (2010). Analysing the risk of photosystem II inhibiting herbicides on the Great Barrier Reef. Royal Australian Chemical Institute’s 13th National Convention in conjunction with the 12th IUPAC International Congress of Pesticide Chemistry. Abstract 460. July, Melbourne.

  12. Mitchell, A., Bainbridge, Z.T., Furnas, M., Packett, R., Lewis, S.E. Karfs, R., Dougall, C. & Brodie, J.E. (2010). Increases in the export of suspended sediment and particulate nutrients from rivers of the Queensland Dry Tropics following drought periods and even after single dry years. Challenges in Environmental Science and Engineering. Abstracts, p.75. September, Cairns, Australia.

  13. Tsatsaros, J.H., Brodie, J.E., Bonet, I.C. & Valentine, P. (2010). Refining water quality objectives in the Tully Basin through a community based approach. 2010 Annual Conference of the Marine and Tropical Sciences Research Facility (MTSRF): Impacts and Achievements of the MTSRF. May, Cairns, Australia.

  14. Waterhouse, J., Mitchell, A., Lewis, S.E. & Brodie, J.E. (2010). Quantifying the sources of pollutants to the Great Barrier Reef. Challenges in Environmental Science and Engineering. Abstracts, p.39. September, Cairns, Australia.

  15. Bainbridge, Z.T., Brodie, J.E., Lewis, S.E., Waterhouse, J. & Wilkinson, S. (2009). Utilising catchment modelling as a tool for monitoring Reef Rescue outcomes in the Great Barrier Reef catchment area. In: 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation (eds: Anderssen, R.S., Braddock, R.D. & Newham L.T.H.). Modelling and Simulation Society of Australia and New Zealand and International Association for Mathematics and Computers in Simulation, July 2009, pp.3301-3307. ISBN: 978-0-9758400-7-8.

  16. Devlin, M.J., Brodie, J.E., Lewis, S.E., Bainbridge, Z.T. & Waterhouse, K. (2009). Comparison and definition of plume characteristics for the Wet and Dry Tropics flood events. Proceedings of the 2009 Marine and Tropical Sciences Research Facility Annual Conference. April, Townsville.

  17. Lewis, S.E., Brodie, J.E., Bainbridge, Z.T., Davis, A.M. & Devlin, M.J. (2009). Assessing the risk of herbicides in the Great Barrier Reef lagoon. Proceedings of the 2009 Marine and Tropical Sciences Research Facility Annual Conference. April, Townsville.

  18. Lewis, S.E., Sherman, B.S., Bainbridge, Z.T., Brodie J.E. & Cooper, M. (2009). Modelling and monitoring the sediment trapping efficiency and sediment dynamics of the Burdekin Falls Dam, Queensland, Australia. In: 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation (eds: Anderssen, R.S., Braddock, R.D. & Newham L.T.H.). Modelling and Simulation Society of Australia and New Zealand and International Association for Mathematics and Computers in Simulation, July 2009, pp.4022-4028. ISBN: 978-0-9758400-7-8.

  19. Milla, R., Whitten, M., Bainbridge, Z.T., Davis, A.M., Lewis, S.E., Brodie, J.E. & Anderson, T. (2009). Demonstration farms: a sustainable and profitable future. In: Proceedings of River Symposium 2009. 21-24 September. Brisbane, Australia.

  20. Brodie, J.E., Lewis, S.E., Mueller, J., Schaffelke, B., Masters, B., Rohde, K. & Bainbridge, Z.T. (2008). Pesticide residues in the Great Barrier Reef: a threat to marine ecosystems? In: Proceedings of the 5th SETAC World Congress. International Society of Ecotoxicology and Chemistry. 3-7 August. Sydney, Australia.

  21. Devlin, M.J., Brodie, J.E., Lewis, S.E. & Bainbridge, Z.T. (2008). 2008 flood plumes from the Burdekin and Fitzroy rivers in the GBR lagoon. In: Proceedings of Marine and Tropical Research Facility. Reef and Rainforest Research Centre. 28 April–1 May. Cairns, Australia.

  22. Lewis, S.E., Bainbridge, Z.T. & Brodie, J.E. (2008). Connectivity and risk: determining sediment trapping efficiency of the Burdekin Falls Dam. In: Proceedings of Marine and Tropical Research Facility. 28 April-1 May. Reef and Rainforest Research Centre. Cairns, Australia.

  23. Lewis, S.E., Brodie, J.E., Bainbridge, Z.T., Davis, A.M., Faithful, J.W., Liessman, L., Rohde, K. & Masters, B. (2008). Herbicide residues in waterways draining sugarcane catchments of the Great Barrier Reef. In: Proceedings of the 5th SETAC World Congress. International Society of Ecotoxicology and Chemistry. 3-7 August. Sydney, Australia.

  24. Lewis, S.E., Brodie, J.E., Bainbridge, Z.T., Mueller, J., Schaffelke, B., Masters, B & Rohde, K. (2008). Pesticide residues in the GBR: a threat to marine ecosystems? In: Proceedings of Marine and Tropical Research Facility. Reef and Rainforest Research Centre. 28 April-1 May. Cairns, Australia.

  25. Maughan, M., Brodie, J.E. & Waterhouse J. (2008). What river impacted this reef? A simple reef exposure model. In: Proceedings of Water Down Under 2008, incorporating the 31 st Hydrology and Water Resources Symposium and the 4 th International Conference on Water Resources and Environment Research, 1912-1923. 14-17 April. Adelaide, Austra lia.

  26. Bainbridge, Z.T., Lewis, S.E. & Brodie, J.E. (2007). Sediment and nutrient exports for the Burdekin River catchment, north Queensland: A comparison of monitoring and modelling data. In: MODSIM 2007 International Congress on Modelling and Simulation (eds: Kulasiri, D. & Oxley, L.), pp.874-880. Modelling and Simulation Society of Australia and New Zealand.

  27. Bohnet, I., Brodie, J.E. & Bartley, R. (2007). Assessing water quality of community defined land use change scenarios for the Douglas Shire, North Queensland. In: Place and Purpose Conference Bendigo, Australia. Victoria Department of Primary Industries.

  28. Hately, L., Armour, J., Brodie, J.E., Faithful, J., Pitt, G. & Nelson, P.N. (2007). Modelling, monitoring and sediment tracing in the Tully river catchment, north Queensland: a comparison of techniques. In: MODSIM 2007 International Congress on Modelling and Simulation (eds. D Kulasiri, D. & Oxley, L.), pp.867-873. Modelling and Simulation Society of Australia and New Zealand.

  29. Lewis, S.E., Bainbridge, Z.T. & Brodie, J.E. (2007). A review of load tools available for calculating pollutant exports to the Great Barrier Reef lagoon: a case study of varying catchment areas. In: MODSIM 2007 International Congress on Modelling and Simulation (eds: Kulasiri, D. & Oxley, L.). Modelling and Simulation Society of Australia and New Zealand.

  30. Brodie, J.E., Dekker, A.G., Brando, V.E., Masters, B., Faithful, J.W., Noble, R. & Rhode, K. (2006). Extent and duration of the algal bloom in the Great Barrier Reef lagoon following river discharge events in the Mackay Whitsunday region, Australia. In: Proceedings of the 13th Australasian Remote Sensing & Photogrammetry Conference: Earth Observation - from Science to Solutions. The Remote Sensing & Photogrammetry Commission of the Spatial Sciences Institute.

  31. Brodie, J.E. (2005). Sources and fate of terrestrially derived nitrogen in the Great Barrier Reef. In: Rainforest meets Reef Conference Abstracts. CRC Reef Research Centre Technical Report No. 64 (eds: Goggin, C.L. & Harvey, T.), p.22. CRC Reef Research Centre, Townsville, Australia.

  32. Thomas, C., Hart, B.T., Nicholson, A., Grace, M.R., Brodie, J.E. & Pollino, C.A. (2005). Development of criteria for simplifying ecological risk models. In: International Congress on Modelling and Simulation (eds A Zerger & RM Argent). Modelling and Simulation Society of Australia and New Zealand, Melbourne, Australia.

  33. Bartley, R., Olley, J., Henderson, A., Prosser, I.P., Hughes, A.O., McKergow, L., Lu, H., Brodie, J.E., Bainbridge, Z.T. & Roth, C. (2004). A sediment budget for the Herbert River catchment, North Queensland, Australia. In: Proceedings of the Catchment to Reef: Water Quality Issues in the Great Barrier Reef Region (eds: Haynes, D. & Schaffelke, B.), p.8. CRC Reef Research Centre Ltd, Townsville, Australia.

  34. Brodie, J.E. (2004). Monitoring water quality on the Great Barrier Reef catchment with the community. In: Proceedings of Seagrass 2004 and the International Seagrass Biology Workshop (ISBW6) (eds: Calladine, A. & Waycott, M.). James Cook University, Townsville, Australia.

  35. Brodie, J.E. & Devlin, M.J. (2004). Exposure of Great Barrier Reef reefs to land-sourced contaminants: changes due to catchment agricultural development. In: Proceedings of the 10th International Coral Reef Symposium. International Society for Reef Studies, Japan.

  36. Brodie, J.E., Fabricius, K., De'ath, G. & Okaji, K. (2004). Are increased nutrient inputs responsible for more outbreaks of Crown-of-Thorns Starfish? An appraisal of the evidence. In: Proceedings of the Catchment to Reef: Water Quality Issues in the Great Barrier Reef Region (eds: Haynes, D. & Schaffelke, B.), p.12. CRC Reef Research Centre Ltd, Townsville, Australia.

  37. Brodie, J.E. & Thomas, C. (2004). Habitat Connectivity. In: Proceedings of Seagrass 2004 and the International Seagrass Biology Workshop (ISBW6) (eds: Calladine, A. & Waycott, M.). James Cook University, Townsville, Australia.

  38. De'ath, G., Fabricius, K., Okaji, K., Brodie, J.E. & Day, K. (2004). Increased chlorophyll levels lead to increased frequency and severity of outbreaks of the crown-of-thorns starfish (Acanthaster planci) on the Great Barrier Reef. In: Proceedings of the Catchment to Reef: Water Quality Issues in the Great Barrier Reef Region (eds: Haynes, D. & Schaffelke, B.), p.19. CRC Reef Research Centre Ltd, Townsville, Australia.

  39. Devlin, M.J. & Brodie, J.E. (2004). Flood processing of river material in Great Barrier Reef waters. In: Proceedings of the Catchment to Reef: Water Quality Issues in the Great Barrier Reef Region. (eds: Haynes, D. & Schaffelke, B.). CRC Reef Research Centre Ltd, Townsville, Australia.

  40. Devlin, M.J. & Brodie, J.E. (2004). Exposure of Great Barrier Reef reefs to land-sourced contaminants: changes due to catchment agricultural development. In: Proceedings of the ECSA 37 ERF Conference. ECSA-ERF.

  41. Greiner, R., Herr, A., Brodie, J.E., Haynes, D.B., Audas, D. & Roth, C. (2004). A triple-bottom-line assessment of basins within the Great Barrier Reef catchment in relation to their sediment, nutrient and pesticide discharges and potential impact of the Great Barrier Reef. In: Proceedings of the Catchment to Reef: Water Quality Issues in the Great Barrier Reef Region (eds: Haynes, D. & Schaffelke, B.), p.31. CRC Reef Research Centre Ltd, Townsville, Australia.

  42. Haynes, D.B. & Brodie, J.E. (2004). Great Barrier Reef water quality ecosystem monitoring: future directorions and management approaches. In: Proceedings of the Catchment to Reef: Water Quality Issues in the Great Barrier Reef Region (eds: Haynes, D. & Schaffelke, B.), p.33. CRC Reef Research Centre Ltd, Townsville, Australia.

  43. McKergow, L., Brodie, J.E., Prosser, I.P., Hughes, A.O., Furnas, M. & Hunter, H. (2004). Sources of sediment and nutrient exports to the Great Barrier Reef. In: Proceedings of the Catchment to Reef: Water Quality Issues in the Great Barrier Reef Region (eds: Haynes, D. & Schaffelke, B.), p.48. CRC Reef Research Centre Ltd, Townsville, Australia.

  44. Moss, A. & Brodie, J.E. (2004). Queensland water quality guidelines and their application to Great Barrier Reef World Heritage are waters. In: Proceedings of the Catchment to Reef: Water Quality Issues in the Great Barrier Reef Region (eds: Haynes, D. & Schaffelke, B.), p.52. CRC Reef Research Centre Ltd, Townsville, Australia.

  45. O'Reagain, P., Fraser, G.C., Brodie, J.E., Bushell, J.J., Holloway, C., Faithful, J.W. & Haynes, D.B. (2004). Runoff and sediment loss under different grazing management strategies in the Upper Burdekin. In: Proceedings of the Catchment to Reef: Water Quality Issues in the Great Barrier Reef Region. (eds: Haynes, D. & Schaffelke, B.), p.54. CRC Reef Research Centre Ltd, Townsville, Australia.

  46. Devlin, M.J., Brodie, J.E., Waterhouse, J., Mitchell, A., Audas, D. & Haynes, D.B. (2003). Exposure of Great Barrier Reef Inner-Shelf Reefs to River-Borne Contaminants. In: Protecting the Values of Rivers, Wetlands and the Reef In: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20-23 November 2001, Townsville, QLD, Australia.

  47. Brodie J.E. (2002). Keeping the wolf from the door: managing land-based threats to the Great Barrier Reef. In: Proceedings of the 9th International Coral Reef Symposium (eds: Moosa et al), 2:705-714. October, 2000, Bali, Indonesia.

  48. Devlin M.J., Waterhouse J. & Brodie J.E. (2002). Terrestrial discharge into the Great Barrier Reef: distribution of river waters and pollutant concentrations during flood plumes. In: Proceedings of the 9th International Coral Reef Symposium (eds: Moosa et al), 2:1205-1211. October, 2000, Bali, Indonesia.

  49. Brodie J.E. & Furnas M. (2001). Status of nutrient and sediment inputs from Great Barrier Reef catchments and impacts on the Reef. In: Proceedings of the 2nd national conference on aquatic environments: sustaining our aquatic environments – implementing solutions. 20-23 November. Townsville, Australia.

  50. Devlin M.H., Brodie J.E., Waterhouse J., Mitchell A., Audas D. & Haynes D. (2001). Exposure of Great Barrier Reef inner-shelf reefs to river-borne contaminants. In: 2nd National Conference on Aquatic Environments: Sustaining Our Aquatic Environments – implementing Solutions, pp. 20-23 November, Townsville. Australia.

  51. Brodie, J.E., Furnas, M., Steven A.D.L., Trott, L.A., Pantus F. & Wright M. (1997). Monitoring chlorophyll in the Great Barrier Reef Lagoon: trends and variability. In: Proceedings 8th International Coral Reef Symposium, 1:797-802. Panama.

  52. Brodie, J.E. & Furnas, M. (1996). Cyclones, river flood plumes and natural water quality extremes in the central Great Barrier Reef. In: Proceedings of the Conference on the Downstream Effects of Land Use (eds: Hunter, H.M. et al), pp.367-374. 26-28 April, 1995, Rockhampton, Australia.

  53. Furnas, M. & Brodie, J.E. (1996). Current status of nutrient levels and other water quality parameters in the Great Barrier Reef. In: Proceedings of the Conference on the Downstream Effects of Land Use (eds: Hunter, H.M. et al), pp.9–21. 26-28 April, 1995, Rockhampton, Australia.

  54. Steven, A., Devlin, M.J., Brodie, J.E., Baer, M. & Lourey, M. (1996). Spatial influence and composition of river plumes in the central Great Barrier Reef. In: Proceedings of the Conference on the Downstream Effects of Land Use (eds: Hunter, H.M. et al), pp.85-92. 26-28 April, 1995, Rockhampton, Australia.

  55. Brodie, J.E. & Furnas, M. (1992). Long term monitoring programs for eutrophication and the design of a monitoring program for the Great Barrier Reef. In: Proceedings 7th International Coral Reef Symposium, 1:77-84. Guam.

Other Publications

  1. Brodie, J.E., Pearson, R., Lewis, S.E., Bainbridge, Z.T., Waterhouse, J. & Prange, J. (2009). Water quality research: baseline synthesis and Year 1 summary. Report to the Minister of Environment and Water Resources. Marine and Tropical Sciences Research Facility, Reef and Rainforest Research Centre, Townsville.

  2. Lewis, S.E., Brodie, J.E., Jupiter, S.D., McCulloch, M.T., Stuart-Williams, H., Clayton, S., Lough, J.M. & Matson, E.G. (2009). Coral geochemical records from the Whitsunday Islands, assessing a water quality gradient. Report to the Marine and Tropical Sciences Research Facility, Reef and Rainforest Research Centre, Cairns.

  3. Lewis, S.E., Milla, R., Brodie, J.E., Bainbridge, Z.T. & Davis, A.M. (2009). Pesticide residues in the Great Barrier Reef. Pesticide News, 86:8-11.

  4. Aquarone, M.C., Adams, S. & Brodie, J.E. (2008). Northeast Australian Shelf – LME#40. In: NOAA Large marine ecosystems summary portal at: http://www.lme.noaa.gov/Portal/jsp/LME_Pages/lme_40.jsp

  5. Brodie, J.E., Binney, J., Fabricius, K., Gordon, I., Hoegh-Gouldberg, O., Hunter, H., O’Reagain, P., Pearson, R., Quirk, M., Thornton, J., Webster, I. & Wilkinson, S. (2008). Scientific consensus statement on water quality in the Great Barrier Reef. The State of Queensland (Department of the Premier and Cabinet). Published by the Reef Water Quality Protection Plan Secretariat.

  6. Brodie, J.E., Binney, J., Fabricius, K., Gordon, I., Hoegh-Gouldberg, O., Hunter, H., O’Reagain, P., Pearson, R., Quirk, M., Thorburn, P., Waterhouse, J., Webster, I. & Wilkinson, S. (2008). Synthesis of evidence to support the Scientific Consensus Statement on Water Quality in the Great Barrier Reef. 84pp. The State of Queensland (Department of the Premier and Cabinet). Published by the Reef Water Quality Protection Plan Secretariat.

  7. Brodie, J.E., Tong, D.L., Devlin, M.J. & Marshall-Crossland, J.I. (2008). ASEAN Marine Water Quality Monitoring Manual. In: ASEAN Marine Water Quality Management Guidelines and Monitoring Manual. 1st Edition, pp.57-432. ASEAN Secretariat, Jakarta.

  8. Devlin M.J, Brodie J.E., Bainbridge Z.T. & Lewis S.E. (2008). Flood plumes in the GBR – The Burdekin and Fitzroy flood plumes, 2008. Case studies for Marine Monitoring Program. Report for the Reef and Rainforest Research Centre.

  9. Fuller, D., Lovell, B., Fung, K., Jeffrey, R., Brulliard, C., Pechey, L., Anthon, S., Baker, S., Hart, B. & Brodie, J.E. (2008). The need for and cost benefit of a pesticide reporting system in the Great Barrier Reef catchment region. Report from URS to the Department of the Environment, Water, Heritage and the Arts.

  10. Sheaves, M.J., Brodie, J.E., Brooke, B.P., Dale, P.E.R., Lovelock, C.E., Waycott, M., Gehrke, P., Johnston, R.W. & Baker, R. (2007). Vulnerability of coastal and estuarine habitats in the Great Barrier Reef to climate change. In: Climate change and the Great Barrier Reef: a vulnerability assessment (eds: Johnson, J.E. & Marshall, P.A.) pp.593-620. Great Barrier Reef Marine Park Authority and the Australian Greenhouse Office.

  11. Sherman, B.S., Brodie, J.E., Cogle, A.L. & Carroll, C. (2007). Appropriate use of catchment models for water quality target setting and land-use management. In: Water quality and Sediment Behaviour of the Future. Predictions for the 21st Century. IAHS Press.

  12. Brizga, S., Kapitzke, I.R., Brodie, J.E., Butler, B.M., Burrows, D.W., Cappo, M. & Dowe, J,L. (2006). Burdekin Basin Draft Water Resource Plan, Environmental Assessment Report Phase II. Queensland Government: Natural Resources, Mines and Water, Brisbane.

  13. Brizga, S., Kapitzke, I.R., Brodie, J.E., Butler, B.M., Burrows, D.W., Cappo, M. & Dowe, J.L. (2006). Burdekin Basin Draft Water Resource Plan, Environmental Assessment Report Phase III. Queensland Government: Natural Resources, Mines and Water, Brisbane.

  14. Brodie, J.E. & Mitchell, A.W. (2006). Sediments and nutrients in north Queensland tropical streams: changes with agricultural development and pristine condition status. CRC Reef Research Centre Technical report no. 62, James Cook University.

  15. Dougall, C., Packett R., Carroll, C., Sherman, B.S., Read, A., Chen, Y. & Brodie, J.E. (2006). Sediment and nutrient modelling in the Fitzroy NRM Region. In: The use of SedNet and ANNEX models to guide GBR catchment sediment and nutrient target setting, 5:1-27. Department of Natural Resources Mines and Water.

  16. Fentie, B., Duncan, I., Sherman, B.S., Read, A.J., Chen, Y., Brodie, J.E. & Cogle, A.L. (2006). Sediment and nutrient modelling in the Burdekin NRM region. In: The use of SedNet and ANNEX Models to guide GBR Catchment Sediment and Nutrient Target Setting (eds: Cogle, A.L., Carroll, C. & Sherman, B.S.), 3:1-29. Department of Resource, Mines and Water.

  17. Fentie, B., Esslemont, G., Searle, R., Sherman, B.S., Read, A., Chen, Y., Brodie, J.E., Wilson, P. & Sallaway, M. (2006). Sediment and nutrient modelling in the Burnett Mary NRM Region. In: The use of SedNet and ANNEX Models to guide GBR Catchment Sediment and Nutrient Target Setting (eds: Cogle, A.L., Carroll, C. & Sherman, B.S.), 6:1-28. Department of Natural Resources Mines and Water.

  18. Hateley, L., Armour, J., Pitt, J., Sherman, B.S., Read, A.J., Chen, Y., Brodie, J.E. & Cogle, A.L. (2006). Sediment and nutrient modelling in the far north Queensland NRM region. In: The use of SedNet and ANNEX Models to guide GBR Catchment Sediment and Nutrient Target Setting (eds: Cogle, A.L., Carroll, C. & Sherman, B.S.), 2:1-32. Department of Natural Resource and Mines.

  19. Kelley, R., Barnett, B.E.W., Bainbridge, Z.T., Brodie, J.E. & Pearson, R.G. (2006). Nutrients, catchments and reefs: a guide to nutrients in your landscape. In: Nutrients, Catchments and Reefs: a guide to nutrients in your landscape. Rainforest CRC & CRC Reef Research Centre, James Cook University.

  20. Masters, B., Sherman, B.S., Read, A., Chen, Y., Brodie, J.E. & Carroll, C. (2006). Sediment and nutrient modelling in the Mackay Whitsunday NRM Region. In: The use of SedNet and ANNEX Models to guide GBR Catchment Sediment and Nutrient Target Setting, 4:1-30. Department of Resources Mines and Water.

  21. Raupach. M., Schoettker., Briggs P., Lovell, J., King, E., Oubelkheir, K., Marks, A., Brando, V.E., Byrne, G., Dyce, P., Dekker, A.G., Barrett, D. & Brodie, J.E. (2006). Use of Earth Observation to Assess Land Condition and Sediment Delivery in Great Barrier Reef Catchments: a Feasibility Study. CSIRO Atmospheric Research and CSIRO Land & Water.

  22. Rohde, K., Masters, B., Brodie, J.E., Faithful, J.W., Noble, R. & Carroll, C. (2006). Fresh and marine water quality in the Mackay Whitsunday Region 2004/2005. In: Fresh and Marine Water Quality in the Mackay Whitsunday Region 2004/2005.

  23. Bartley, R., Henderson, A., Prosser, I.P., Hughes, A.O., McKergow, L., Lu, H., Bainbridge, Z.T., Brodie, J.E. & Roth, C. (2003). Patterns of erosion and sediment and nutrient transport in the Herbert River catchment, Queensland. CSIRO & the Herbert River Catchment Group.

  24. Brodie, J.E. & Furnas, M. (2003). Status of nutrient and sediment inputs from Great Barrier Reef Catchments and impacts on the Reef. In: Protecting the values of rivers, wetlands and the reef. Department of Natural Resources and Mines.

  25. Brodie, J.E., Mitchell, A., Furnas, M., Haynes, D.B., Waterhouse, J., Ghonim, S., Morris, S., Yorkston, H. & Audas, D. (2003). Developing catchment pollutant load targets for the protection of the Great Barrier Reef. In: Protecting the values of rivers, wetlands and the reef. Department of Natural Resources and Mines.

  26. Brodie J.E., Furnas M., Ghonim S., Haynes D., Mitchell A., Morris S., Waterhouse J., Yorkston H., Audas D., Lowe D. & Ryan M. (2001). Great Barrier Reef Catchment Water Quality Action Plan, 116pp. Great Barrier Reef Marine Park Authority, Townsville.

  27. Devlin M.J., Waterhouse J., Taylor J., & Brodie J.E. (2001). Flood plumes in the Great Barrier Reef: spatial and temporal patterns in composition and distribution. GBRMPA Research Publication No 68, Great Barrier Reef Marine Park Authority, Townsville, Australia.

  28. Gilbert M. & Brodie J.E. (2001). Population and Major Land Use in the Great Barrier Reef Catchment Area: Spatial and Temporal Trends. 72pp. Great Barrier Reef Marine Park Authority, Townsville.

  29. Haynes D., Brodie J.E., Christie C., Devlin M.J., Michalek-Wagner K., Morris S., Ramsay M., Storrie J., Waterhouse J. & Yorkston H. (2001). Great Barrier Reef water quality: current issues, 90pp. Great Barrier Reef Marine Park Authority, Townsville,.

  30. Brodie J.E., Al-Sorimi M. & Turak E. (1998). Fish and fisheries of Yemen's Red Sea. Chapter 4. In: Protection of Marine Ecosystems of the Red Sea Coast of Yemen (eds: DouAbal, A. et al), pp.51-71. UN Publication.

  31. Brodie J.E. & Turak E. (1998). Threats to marine organisms and habitats of Yemen's Red Sea. Chapter 5. In: Protection of Marine Ecosystems of the Red Sea Coast of Yemen (eds: DouAbal, A. et al), pp.73-89. UN Publication.

  32. Rouphael T., Turak E. & Brodie J.E. (1998). Seagrasses and mangroves of Yemen's Red Sea. Chapter 3. In: Protection of Marine Ecosystems of the Red Sea Coast of Yemen (eds: DouAbal, A. et al), pp.41-49. UN Publication.

  33. Turak E. & Brodie J.E. (1998). Coral and reef habitats. In: Protection of Marine Ecosystems of the Red Sea Coast of Yemen (eds: DouAbal, A. et al), pp.17-39. UN Publication.

  34. Brodie J.E. (1997). Nutrients in the Great Barrier Reef region. In: Nutrients in Marine and Estuarine Environments (ed: Cosser, P.), pp.7-28. State of the Environment Technical Paper Series (Estuaries and the Sea). Environment Australia, Canberra.

  35. Brodie, J.E. (1995). River flood plumes in the Great Barrier Reef lagoon. In: Great Barrier Reef: Terrigenous Sediment Flux and Human Impacts. Reef Research CRC Workshop Report, Reef Research CRC, Townsville.

  36. Brodie, J.E. (1995). Nutrients and eutrophication in the Australian marine environment. In: The State of the Marine Environment. Report for Australia, Technical Annex 2, pp.1-29. DEST, Canberra.

  37. Brodie, J.E. & Mitchell, A. (1992). Nutrient composition of the January 1991 Fitzroy River plume. In: Workshop on the Impacts of Flooding, GBRMPA Workshop Series No. 17, pp.56-74. GBRMPA, Townsville.

  38. Brodie, J.E. (1991). Urban impact on the Great Barrier Reef. In: Land Use Patterns and Nutrient Loading of the Great Barrier Reef Region, pp.18-26. James Cook University, Townsville.

  39. Naidu, S., Brodie, J.E., Aalbersberg, W.G.L., Fuavao, V.A., Maata, M., Naqasima, M., Whippy, P. & Morrison, R.J. (1991). Water quality studies on selected South Pacific lagoons. UNEP Regional Seas Reports and Studies No. 136, UNEP, Nairobi.

  40. Brodie, J.E., Arnold, C., Eldredge, L., Hammond, L., Holthus, P., Mowbray, D. & Tortell, P. (1990). State of the marine environment in the South Pacific region. UNEP Regional Seas Reports and Studies No. 127, 59pp. UNEP, Nairobi.

  41. Brodie, G.D. & Brodie, J.E. (1990). A checklist of opisthobranch molluscs of Fiji, 11:53-63. J. Malacological Society Australia.